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Молекулярная модель образования комплекса ОСР с фикобилисомой

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Список литературы:

  1. N. A. Baker, D. Sept, S. Joseph, et al. Electrostatics of nanosystems: application to microtubules and the ribosome // PNAS. — 2001. — no. 98. — P. 10037–10041. — DOI: 10.1073/pnas.181342398.
  2. C. I. Bayly, P. Cieplak, W. Cornell, P. A. Kollman. A Well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: the RESP model // J. Phys. Chem. — 1993. — no. 97. — P. 10269–10280. — DOI: 10.1021/j100142a004.
  3. K. Brejc, R. Ficner, R. Huber, S. Steinbacher. Isolation, crystallization, crystal structure analysis and refinement of allophycocyanin from the cyanobacterium spirulina platensis at 2.3 A resolution // J. Mol. Biol. — 1995. — no. 249. — P. 424–440. — DOI: 10.1006/jmbi.1995.0307.
  4. U. Essmann, L. Perera, M. L. Berkowitz, et al. A smooth particle mesh ewald method // J. Chem. Phys. — 1995. — no. 103. — P. 8577–8593. — DOI: 10.1063/1.470117. — ads: 1995JChPh.103.8577E.
  5. X. Gao, T. D. Wei, N. Zhang, et al. Molecular insights into the terminal energy acceptor in cyanobacterial phycobilisome // Mol. Microb. — 2004. — no. 85. — P. 907–915.
  6. A. A. Granovsky. Firefly version 8.0.0. — http://classic.chem.msu.su/gran/firefly/index.html.
  7. W. L. Jorgensen, J. Chandrasekhar, J. D. Madura, et al. Comparison of simple potential functions for simulating liquid water // J. Chem. Phys. — 1983. — no. 79. — P. 926–935. — DOI: 10.1063/1.445869. — ads: 1983JChPh..79..926J.
  8. W. L. Jorgensen, D. C. Maxwell, J. Tirado-Rives. Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids // J. Amer. Chem. Soc. — 1996. — no. 118. — P. 11225–11236. — DOI: 10.1021/ja9621760.
  9. M. Karplus, J. N. Kushick. Method for estimating the configurational entropy of macromolecules // Macromol. — 1981. — no. 14. — P. 325–332. — DOI: 10.1021/ma50003a019. — ads: 1981MaMol..14..325K.
  10. C. A. Kerfeld, M. R. Sawaya, B. Vishnu, et al. The crystal structure of a cyanobacterial water-soluble carotenoid binding protein // Structure. — 2003. — no. 11. — P. 55–65. — DOI: 10.1016/S0969-2126(02)00936-X.
  11. D. Kirilovsky, C. A. Kerfeld. The orange carotenoid protein: a blue-green light photoactive protein // Photochem. Photobiol, Sci. — 2013. — no. 12. — P. 1135–1143. — DOI: 10.1039/c3pp25406b.
  12. P. A. Kollman, I. Massova, C. Reyes, et al. Calculating structures and free eenergies of complex molecules: combining molecular mechanics and continuum models // Acc. Chem. Res. — 2000. — no. 33. — P. 889–897. — DOI: 10.1021/ar000033j.
  13. R. L. Leverenz, D. Jallet, M. Li, et al. Structural and functional modularity of the orange carotenoid protein: distinct roles for the N- and C-terminal domains in cyanobacterial photoprotection // Plant Cell. — 2014. — no. 26. — P. 426–437. — DOI: 10.1105/tpc.113.118588.
  14. G. Macindoe, L. Mavridis, V. Venkatraman, et al. HexServer: an FFT-based protein docking server powered by graphics processors // Nucl. Acid. Res. — 2010. — no. 38. — P. 445–449.
  15. G. I. Makhatadze, P. L. Privalov. Contribution of hydration to protein folding thermodynamics. I. The enthalpy of hydration // J. Mol. Biol. — 1993. — no. 232. — P. 639–359. — DOI: 10.1006/jmbi.1993.1416.
  16. P. L. Privalov, G. I. Makhatadze. Contribution of hydration to protein folding thermodynamics. II. The entropy and gibbs energy of hydration // J. Mol. Biol. — 1993. — no. 232. — P. 660–679. — DOI: 10.1006/jmbi.1993.1417.
  17. S. Pronk, S. Pall, R. Schulz, et al. GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit // Bioinf. — 2013. — no. 29. — P. 845–854. — DOI: 10.1093/bioinformatics/btt055.
  18. M. G. Rakhimberdieva, I. N. Stadnichuk, I. V. Elanskaya, N. V. Karapetyan. Carotenoid-induced quenching of the phycobilisome fluorescence in photosystem ii-deficient mutant of synechocystis sp // FEBS Lett. — 2004. — no. 574. — P. 85–88. — DOI: 10.1016/j.febslet.2004.07.087.
  19. M. W. Schmidt, K. K. Baldridge, J. A. Boatz, et al. General Atomic and molecular electronic structure system // J. Comp. Chem. — 1993. — no. 14. — P. 1347–1363. — DOI: 10.1002/jcc.540141112.
  20. D. Sitkoff, K. A. Sharp, B. Honig. Accurate calculation of hydration free energies using macroscopic solvent models // J. Phys. Chem. — 1994. — no. 98. — P. 1978–1988. — DOI: 10.1021/j100058a043.
  21. I. N. Stadnichuk, M. F. Yanyushin, G. Bernat, et al. Fluorescence quenching of the phycobilisome terminal emitter LCM from the cyanobacterium synechocystis sp. PCC 6803 detected in vivo and in vitro // J. Photochem. Photobiol. B. — 2013. — no. 125. — P. 137–145. — DOI: 10.1016/j.jphotobiol.2013.05.014.
  22. I. N. Stadnichuk, M. F. Yanyushin, E. G. Maksimov, et al. Site of non-photochemical quenching of the phycobilisome by orange carotenoid protein in the cyanobacterium Synechocystis sp. PCC 6803 // BBA. — 2012. — no. 1817. — P. 1436–1445.
  23. I. Szabo, E. Bergantino, G. M. Giacometti. Light and oxygenic photosynthesis: energy dissipation as a protection mechanism against photo-oxidation // EMBO Rep. — 2005. — no. 6. — P. 629–634. — DOI: 10.1038/sj.embor.7400460.
  24. M. Watanabe, M. Ikeuchi. Phycobilisome: architecture of a light-harvesting supercomplex // Photosynth. Res. — 2013. — no. 116. — P. 265–276. — DOI: 10.1007/s11120-013-9905-3.
  25. A. Wilson, G. Ajlani, J. M. Verbavatz, et al. A Soluble carotenoid protein involved in phycobilisomerelated energy dissipation in cyanobacteria // Plant. Cell. — 2006. — no. 18. — P. 992–1007. — DOI: 10.1105/tpc.105.040121.
  26. H. Zhang, H. Liu, D. M. Niedzwiedzki, et al. Molecular mechanism of photoactivation and structural location of the cyanobacterial orange carotenoid protein // Biochemistry. — 2014. — no. 53. — P. 13–19. — DOI: 10.1021/bi401539w.

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