Все выпуски

Список литературы:

1. D. Bratsun, D. Volfson, J. Hasty, L. Tsimring. Delay-induced stochastic oscillations in gene regulation // PNAS. — 2005. — V. 102, no. 41. — P. 14593–14598. — DOI: 10.1073/pnas.0503858102. — ads: 2005PNAS..10214593B.
2. D. Bratsun, D. Volfson, J. Hasty, L. Tsimring. Non-Marcovian processes in Gene Regulation // Noise in Complex Systems and Stochastic Dynamics III. — Proceeding of SPIE. — 2005. — V. 5845. — P. 210–219. — edited by Laszlo B.Kish, Katja Lindenberg, Zoltan Gingl. — DOI: 10.1117/12.609707. — ads: 2005SPIE.5845..210B.
3. T. Danino, O. Mondragon-Palomino, L. Tsimring, J. Hasty. A synchronized quorum of genetic clocks // Nature. — 2010. — V. 423. — P. 326–330. — DOI: 10.1038/nature08753. — ads: 2010Natur.463..326D.
4. J. C. Dunlap. Genetics and molecular analysis of circadian rhythms // Annu. Rev. Genet. — 1996. — V. 30. — P. 579–601. — DOI: 10.1146/annurev.genet.30.1.579.
5. J. C. Dunlap. Molecular bases for circadian clocks // Cell. — 1999. — V. 96, no. 2. — P. 271–290. — DOI: 10.1016/S0092-8674(00)80566-8.
6. P. A. François. Model for the Neurospora Circadian Clock // Biophys. J. — 2005. — V. 88, no. 4. — P. 2369–2383. — DOI: 10.1529/biophysj.104.053975.
7. A. C. Froehlich, Y. Liu, J. J. Loros, J. C. Dunlap. White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter // Science. — 2002. — V. 297. — P. 815–819. — DOI: 10.1126/science.1073681. — ads: 2002Sci...297..815F.
8. A. C. Froehlich, J. J. Loros, J. C. Dunlap. Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY // PNAS. — 2003. — V. 100, no. 10. — P. 5914–5919. — DOI: 10.1073/pnas.1030057100. — ads: 2003PNAS..100.5914F.
9. J. E. Galagan, S. E. Calvo, K. A. Borkovich, et al. The genome sequence of the filamentous fungus Neurospora crassa // Nature. — 2003. — V. 422. — P. 859–868. — DOI: 10.1038/nature01554. — ads: 2003Natur.422..859G.
10. D. T. Gillespie. Exact stochastic simulation of coupled chemical reactions // J. Phys. Chem. — 1977. — V. 81. — P. 2340–2361. — DOI: 10.1021/j100540a008.
11. J. Hasty, J. J. Collins. Translating the noise // Nature Genetics. — 2002. — V. 31. — P. 13–14. — DOI: 10.1038/ng0502-13.
12. Q. He, P. Cheng, Y. Yang, Q. He, H. Yu, Y. Liu. FWD1-mediated degradation of FRQ in Neurospora establishes a conserved mechanism for circadian clock regulation // Embo. J. — 2003. — V. 22, no. 17. — P. 4421–4430. — DOI: 10.1093/emboj/cdg425.
13. P. L. Lakin-Thomas, S. Brody. Circadian rhythms in microorganisms: New complexities // Annu. Rev. Microbiol. — 2004. — V. 58. — P. 489–519. — DOI: 10.1146/annurev.micro.58.030603.123744.
14. P. L. Lakin-Thomas, G. G. Cote, S. Brody. Circadian rhythms in Neurospora crassa: biochemistry and genetics // Crit. Rev. Microbiol. — 1990. — V. 17, no. 5. — P. 365–416. — DOI: 10.3109/10408419009114762.
15. K. Lee, J. J. Loros, J. C. Dunlap. Interconnected feedback loops in the Neurospora circadian system // Science. — 2000. — V. 289. — P. 107–110. — DOI: 10.1126/science.289.5476.107. — ads: 2000Sci...289..107L.
16. M. A. Lema, D. A. Golombek, J. Echave. Delay model of the circadian pace maker // J. Theor. Biol. — 2000. — V. 204. — P. 565–573. — DOI: 10.1006/jtbi.2000.2038.
17. Y. Liu, J. Loros, J. C. Dunlap. Phosphorylation of the Neurospora clock protein FREQUENCY determines its degradation rate and strongly influences the period length of the circadian clock // PNAS. — 2000. — V. 97, no. 1. — P. 234–239. — DOI: 10.1073/pnas.97.1.234. — ads: 2000PNAS...97..234L.
18. J. J. Loros, J. C. Dunlap. Genetic and molecular analysis of circadian rhythms in Neurospora // Annu. Rev. Physiol. — 2001. — V. 63. — P. 757–794. — DOI: 10.1146/annurev.physiol.63.1.757.
19. Neurospora crassa genome. — Broad Institute. — http://www.broadinstitute.org/annotation/genome/neurospora/GenomesIndex.html.
20. C. S. Pittendrigh, V. G. Bruce, N. S. Rosensweig, M. L. Rubin. A biological clock in Neurospora // Nature. — 1959. — V. 184. — P. 169–170. — DOI: 10.1038/184169a0. — ads: 1959Natur.184..169P.
21. C. S. Pittendrigh. Temporal organization: reflections of a Darwinian clock-watcher // Annu. Rev. Physiol. — 1993. — V. 55. — P. 16–54. — DOI: 10.1146/annurev.ph.55.030193.000313.
22. C. V. Rao, A. P. Arkin. Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm // J. Chem. Phys. — 2003. — V. 118. — P. 4999–5010. — DOI: 10.1063/1.1545446. — ads: 2003JChPh.118.4999R.
23. T. Schepper, D. Klinkerberg, C. Pennartz, J. Van Pelt. A mathematical model for the intracellular circadian rhythm generator // J. Neurosci. — 1999. — V. 19. — P. 40–47. — DOI: 10.1523/JNEUROSCI.19-01-00040.1999.
24. P. Smolen, D. A. Baxter, J. H. Byrne. Modeling circadian oscillations with interlocking positive and negative feedback loops // J. Neurosci. — 2001. — V. 21, no. 17. — P. 6644–6656. — DOI: 10.1523/JNEUROSCI.21-17-06644.2001.
25. P. Smolen, D. A. Baxter, J. H. Byrne. Reduced models of the circadian oscillators in Neurospora crassa and Drosophila melanogaster illustrate mechanistic similarities // OMICS. — 2003. — V. 7, no. 4. — P. 337–354. — DOI: 10.1089/153623103322637661.
26. K. Sriram, M. S. Gopinathan. A two variable delay model for the circadian rhythm of Neurospora crassa // J. Theor. Biol. — 2004. — V. 231. — P. 23–38. — DOI: 10.1016/j.jtbi.2004.04.006. — MathSciNet: MR2107548.
27. P. Swain, M. Elowitz, E. Siggia. Intrinsic and Extrinsic contributions to stochasticity in gene expression // PNAS. — 2002. — V. 99. — P. 12795–12800. — DOI: 10.1073/pnas.162041399. — ads: 2002PNAS...9912795S.
28. B. M. Sweeney. Circadian rhythms, definition and general characterization / The Molecular Basis of Circadian Rhythms. — Berlin: Dahlem Konferenzen, 1976. — P. 77–83. — edited J. W. Hastings and H.-G. Schweiger.
29. В. Ю. Соколовский, Т. А. Белозерская. Действие стрессоров на дифференциальную экспрессию генов в ходе развития Neurospora crassa // Успехи биологической химии. — 2000. — Т. 40. — С. 85–152.